PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_31723-P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 283aa    MW: 30136.9 Da    PI: 4.6938
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_31723-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.93e-101562148
                     TSSS-HHHHHHH..HHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdell..vdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd+ll   +    + ++ W++Ia +++ gRt++++k++w+++l
  TRIUR3_31723-P1 15 KGPWTIEEDKLLgeRRWLMSWLTR-WSSIATKLP-GRTDNEIKNYWNTHL 62
                     789999999999555677777777.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.5771066IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.0E-171266IPR009057Homeodomain-like
SuperFamilySSF466892.54E-121271IPR009057Homeodomain-like
SMARTSM007175.1E-91464IPR001005SANT/Myb domain
PfamPF002494.8E-91562IPR001005SANT/Myb domain
CDDcd001677.56E-101762No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MGRSPSCDGE TGVKKGPWTI EEDKLLGERR WLMSWLTRWS SIATKLPGRT DNEIKNYWNT  60
HLHKKLLGMG IDPVTHRPRT DLSLLAGLPG LLAVAGNFVD SGAATAAWNM NALKLQVDAA  120
KFQLLQGLVR ALTTAAAPAP APGMDNLRAL LAVSTGGIDQ NMLLQQCQWN DMNNLPALTS  180
SAPTSGMHNI SGMFDGFSAS DGLSSTELGC HGGVSGRNGT VDPMVADDQE CKNNGGGGVS  240
CEETPASSPF DGLQSLNLID DLNTDGGWKD LLEQMSWLNS SEL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0572601e-39EF057260.1 Panicum virgatum microsatellite PVSSR146 and microsatellite PVSSR147 sequences.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964317.12e-73PREDICTED: transcription factor MYB39-like
TrEMBLM8B4F10.0M8B4F1_TRIUA; Transcription factor MYB39
STRINGSi006790m5e-73(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55293158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.22e-28myb domain protein 9